PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016072.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 387aa    MW: 43830 Da    PI: 6.7133
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016072.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
      Pbr016072.1 14 KGPWSPEEDARLKAYIEEHGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding33.78.4e-1170111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++ Ed ++  +    G++ W+ Ia+ ++ gRt++++k++w++
      Pbr016072.1  70 GFSEKEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      699*****************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.703966IPR017930Myb domain
SuperFamilySSF466894.6E-2611109IPR009057Homeodomain-like
SMARTSM007175.1E-131364IPR001005SANT/Myb domain
PfamPF002498.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231569IPR009057Homeodomain-like
CDDcd001673.88E-91662No hitNo description
SMARTSM007176.0E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129415.84567117IPR017930Myb domain
PfamPF002491.6E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2270117IPR009057Homeodomain-like
CDDcd001671.29E-671113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDARLKAYIE EHGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEKEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGM  120
RKQSNINRSP SDQSRDHQLK DADDAQALSS SALERLQLHM QLQSLQNPFS FYNHPALWPK  180
LHPLQEKMIQ TLRSMNDNNP MMHHHALTTP LQPAQWQKGN INDVYEQVEP TSASILIQEE  240
YAKLCNQKYM DELENPLNGM SSSDTRYHAC ISTSNQVDST IVAAKADNVE QSNSVGTHGP  300
HHQVNLSFHG EFGDTDNNKC VGFTAQQEHD QMAEFDCFKE MNVSKDSLVW WANEFDAKSA  360
SSDSWDSTSI LHSQGVFQDY ELGYNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-22141177108B-MYB
1h8a_C5e-221411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373376.10.0PREDICTED: transcription factor RAX3
TrEMBLM5XIY10.0M5XIY1_PRUPE; Uncharacterized protein
STRINGPOPTR_0018s10390.11e-154(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-98myb domain protein 36